PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G159100.2
Common NameB456_011G159100, LOC105778367
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 407aa    MW: 46048.6 Da    PI: 5.3174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G159100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12195246155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Gorai.011G159100.2 195 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 246
                         79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.20E-13193250No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13193249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16194260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428194245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9200251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.79E-4332396No hitNo description
PROSITE profilePS516719.216332406IPR002912ACT domain
SuperFamilySSF550211.32E-5332394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEKEENYAAN FVGPDYSLDH HQHHHQHQQP RIGESCGDNN NGMVDYMLNN PQQHQHISSS  60
SGFYTTPASF DKLSFADVMQ FADFGPKLAL NQTRIPEDET GIDPSGYFLR FPVLNDKLEA  120
ESLMVPPSGI ENVEELVEDK HGEDEARVSD NAAVQLRFFG EDDVHNRNPI APTDPAKNKR  180
KRPRTIKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE  240
FVRELEQLLQ CLESQKRRRL YGEASRQMGD TSMAAIQQQQ QQQQQPVFPP MSTLPNDQMK  300
VMEYETGLRE ETAENKSCLA DVEVKLLGFD AMIKILCRRR PGQLVKTIAA LEDLQLNILH  360
TNITTIEQTV LYSFNVKVTS ESGFSAEDIA SSVQQIFSFI HANSSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195206RMTHIAVERNRR
2255259KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457507.10.0PREDICTED: transcription factor FAMA isoform X2
SwissprotQ56YJ81e-152FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0D2UTX70.0A0A0D2UTX7_G
STRINGPOPTR_0001s32160.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-140bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]